All Papers
Author: J.M. Herruzo

2022

2021

Genome Sequence Alignment - Design Space Exploration for Optimal Performance and Energy Architectures [doi]
Y.M. Qureshi, J.M. Herruzo, M. Zapater, K. Olcoz, S. Gonzalez-Navarro, O. Plata, D. Atienza
IEEE Transactions on Computers, 70 (12), December 2021, pp. 2218-2233

Enabling Fast and Energy-Efficient FM-index Exact Matching Using Processing-Near-Memory [doi]
J.M. Herruzo, I. Fernandez, S. Gonzalez-Navarro, O. Plata
The Journal of Supercomputing, 77, September 2021, pp. 10226-10251

2020

Accelerating Sequence Alignments Based on FM-Index Using the Intel KNL Processor [doi]
J.M. Herruzo, S. Gonzalez-Navarro, P. Ibañez, V. Viñals, J. Alastruey, O. Plata
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 17 (4), July-August 2020, pp. 1093-1104

2019

Boosting Backward Search Throughput for FM-Index Using a Compressed Encoding [doi]
J.M. Herruzo, S. Gonzalez-Navarro, P. Ibañez, V. Viñals, J. Alastruey, O. Plata
Data Compression Conference (DCC'19), Snowbird (UH, USA), March 2019

2018

Aceleración de una Aplicación de Acceso Intensivo e Impredecible a los datos en el Procesador Intel Xeon Phi KNL [link]
J.M. Herruzo, S. Gonzalez-Navarro, P. Ibañez, V. Viñals, J. Alastruey, O. Plata
XIX Jornadas de Paralelismo (JJPP'18) (parte de las Jornadas Sarteco), Teruel (Spain), September 2018

Optimizing Large Data Structures with Unpredictable Access Patterns in the Intel KNL Processor [link]
J.M. Herruzo, S. Gonzalez-Navarro, O. Plata
20th Workshop on Compilers for Parallel Computing (CPC'18), Dublin (Ireland), April 2018

Exact Alignment with FM-index on the Intel Xeon Phi Knights Landing Processor [link]
J.M. Herruzo, S. Gonzalez-Navarro, P. Ibañez, V. Viñals, J. Alastruey, O. Plata
Workshop on Accelerator Architecture in Computational Biology and Bioinformatics (AACBB'18) (co-located with HPCA'18), Vienna (Austria), February 2018

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