All papers: Last 5 Years
Author: O. Plata

2023

Comparing Assembly Strategies for Third-Generation Sequencing Technologies Across Different Genomes [doi]
E. Espinosa, R. Bautista, I. Fernandez, R. Larrosa, E.L. Zapata, O. Plata
Genomics, August 2023

Time Series Analysis Acceleration with Advanced Vectorization Extensions [doi]
R. Quislant, I. Fernandez, E. Gutierrez, O. Plata
The Journal of Supercomputing, 79, February 2023, pp. 10178-10207

2022

Accelerating Time Series Analysis via Processing using Non-Volatile Memories [arXiv]
I. Fernandez, A. Manglik, C. Giannoula, R. Quislant, N.M. Ghiasi, J.G. Luna, E. Gutierrez, O. Plata, O. Mutlu
arXiv:2211.04369 [cs.AR], November 2022

TraTSA: A Transprecision Framework for Efficient Time Series Analysis [doi]
I. Fernandez, R. Quislant, S. Gonzalez-Navarro, E. Gutierrez, O. Plata
Journal of Computational Science, 63, September 2022, 101784

Exploiting Vector Extensions to Accelerate Time Series Analysis [link]
R. Quislant, I. Fernandez, E. Serralvo, E. Gutierrez, O. Plata
XXIII Jornadas de Paralelismo (JP'22) (parte de las Jornadas Sarteco), Alicante (Spain), September 2022

Diseño del Compilador de la Máquina Virtual Inmortal iVM [link]
E. Gutierrez, S. Romero, O. Plata
XXIII Jornadas de Paralelismo (JP'22) (parte de las Jornadas Sarteco), Alicante (Spain), September 2022

Whole-Genome Assembly: An Experimental Study of Computational Costs and Architectural Opportunities [link]
E. Espinosa, I. Fernandez, R. Larrosa, O. Plata
XXIII Jornadas de Paralelismo (JP'22) (parte de las Jornadas Sarteco), Alicante (Spain), September 2022

Exploiting Near-Data Processing to Accelerate Time Series Analysis [doi][arXiv]
I. Fernandez, R. Quislant, C. Giannoula, M. Alser, J. Gomez-Luna, E. Gutierrez, O. Plata, O. Mutlu
IEEE Annual Symposium on VLSI (ISVLSI'22), Nicosia (Cyprus), July 2022
(arXiv:2206.00938 [cs.AR])

Whole-Genome Assembly: An Experimental Study of Computational Costs and Architectural Opportunities [link]
E. Espinosa, I. Fernandez, R. Larrosa, O. Plata
Workshop on Accelerator Architecture in Computational Biology and Bioinformatics (AACBB'22) (co-located with HPCA'22), New York (NY, USA), June 2022

Exploiting Vector Extensions to Accelerate Time Series Analysis [doi]
R. Quislant, I. Fernandez, E. Serralvo, E. Gutierrez, O. Plata
30th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP'22), Valladolid, Spain, March 2022

Speculative Barriers with Transactional Memory [doi]
M. Pedrero, R. Quislant, E. Gutierrez, E.L. Zapata, O. Plata
IEEE Transactions on Computers, 71 (1), January 2022, pp. 197-208

2021

Genome Sequence Alignment - Design Space Exploration for Optimal Performance and Energy Architectures [doi]
Y.M. Qureshi, J.M. Herruzo, M. Zapater, K. Olcoz, S. Gonzalez-Navarro, O. Plata, D. Atienza
IEEE Transactions on Computers, 70 (12), December 2021, pp. 2218-2233

An Abstract Machine Approach to Preserving Digital Information [doi]
I. Rummelhoff, E. Gutierrez, T. Kristoffersen, O. Liabo, B.M. Ostvold, O. Plata, S. Romero
IEEE Access, 9, November 2021, pp. 154914-154932

Enabling Fast and Energy-Efficient FM-index Exact Matching Using Processing-Near-Memory [doi]
J.M. Herruzo, I. Fernandez, S. Gonzalez-Navarro, O. Plata
The Journal of Supercomputing, 77, September 2021, pp. 10226-10251

Energy-Efficient Time Series Analysis Using Transprecision Computing [link]
I. Fernandez, R. Quislant, E. Gutierrez, O. Plata
XXXI Jornadas de Paralelismo (JP'20/21) (parte de las Jornadas Sarteco), Malaga (Spain), September 2021

Enabling Fast and Energy Efficient FM-index Exact Matching using PNM [link]
J.M. Herruzo, I. Fernandez, E. Espinosa, S. Gonzalez-Navarro, R. Larrosa, O. Plata
XXXI Jornadas de Paralelismo (JP'20/21) (parte de las Jornadas Sarteco), Malaga (Spain), September 2021

2020

NATSA: A Near-Data Processing Accelerator for Time Series Analysis [doi][arXiv]
I. Fernandez, R. Quislant, C. Giannoula, M. Alser, J. Gomez-Luna, E. Gutierrez, O. Plata, O. Mutlu
38th IEEE International Conference on Computer Design (ICCD'20), Hardtford (CT, USA), October 2020
(arXiv:2010.02079 [cs.AR])

Energy-Efficient Time Series Analysis Using Transprecision Computing [doi]
I. Fernandez, R. Quislant, E. Gutierrez, O. Plata
IEEE 32nd International Symposium on Computer Architecture and High Performance Computing (SBAC-PAD'20), Porto (Portugal), September 2020

Accelerating Sequence Alignments Based on FM-Index Using the Intel KNL Processor [doi]
J.M. Herruzo, S. Gonzalez-Navarro, P. Ibañez, V. Viñals, J. Alastruey, O. Plata
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 17 (4), July-August 2020, pp. 1093-1104

2019

Accelerating Time Series Motif Discovery in the Intel Xeon Phi KNL Processor [doi]
I. Fernandez, A. Villegas, E. Gutierrez, O. Plata
The Journal of Supercomputing, 75, November 2019, pp. 7053-7075

Improving Hardware Transactional Memory Parallelization of Computational Geometry Algorithms Using Privatizing Transactions [doi]
R. Quislant, E. Gutierrez, E.L. Zapata, O. Plata
Journal of Parallel and Distributed Computing, 131, September 2019, pp. 103-119

Time Series Analysis Using Transprecision Computing [link]
I. Fernandez, E. Gutierrez, O. Plata
OPRECOMP Summer School, Perugia (Italy), September 2019

Aceleración del Análisis de Series Temporales en el Procesador Intel Xeon Phi KNL [link]
I. Fernandez, A. Villegas, E. Gutierrez, O. Plata
XXX Jornadas de Paralelismo (JP'19) (parte de las Jornadas Sarteco), Caceres (Spain), September 2019

Barreras Especulativas con Memoria Transaccional [link]
M. Pedrero, R. Quislant, E. Gutierrez, E.L. Zapata, O. Plata
XXX Jornadas de Paralelismo (JP'19) (parte de las Jornadas Sarteco), Caceres (Spain), September 2019

Toward a Software Transactional Memory for Heterogeneous CPU-GPU Processors [doi]
A. Villegas, A. Navarro, R. Asenjo, O. Plata
The Journal of Supercomputing, 75, August 2019, pp. 4177-4192

Boosting Backward Search Throughput for FM-Index Using a Compressed Encoding [doi]
J.M. Herruzo, S. Gonzalez-Navarro, P. Ibañez, V. Viñals, J. Alastruey, O. Plata
Data Compression Conference (DCC'19), Snowbird (UH, USA), March 2019