All papers: Last 5 Years
Author: E. Espinosa

2025

SeqMatcher: Efficient Genome Sequence Matching with AVX-512 Extensions [doi]
E. Espinosa, R. Quislant, R. Larrosa, O. Plata
The Journal of Supercomputing, 81, January 2025, 355

2024

Advancements in Long-Read Genome Sequencing Technologies and Algorithms [doi]
E. Espinosa, R. Bautista, R. Larrosa, O. Plata
Genomics, 116 (3), May 2024, 110842

2023

Comparing Assembly Strategies for Third-Generation Sequencing Technologies Across Different Genomes [doi]
E. Espinosa, R. Bautista, I. Fernandez, R. Larrosa, E.L. Zapata, O. Plata
Genomics, 115 (5), September 2023, 110700

2022

Whole-Genome Assembly: An Experimental Study of Computational Costs and Architectural Opportunities [link]
E. Espinosa, I. Fernandez, R. Larrosa, O. Plata
XXXII Jornadas de Paralelismo (JP'22) (parte de las Jornadas Sarteco), Alicante (Spain), September 2022

Whole-Genome Assembly: An Experimental Study of Computational Costs and Architectural Opportunities [link]
E. Espinosa, I. Fernandez, R. Larrosa, O. Plata
Workshop on Accelerator Architecture in Computational Biology and Bioinformatics (AACBB'22) (co-located with HPCA'22), New York (NY, USA), June 2022

2021

Enabling Fast and Energy Efficient FM-index Exact Matching using PNM [link]
J.M. Herruzo, I. Fernandez, E. Espinosa, S. Gonzalez-Navarro, R. Larrosa, O. Plata
XXXI Jornadas de Paralelismo (JP'20/21) (parte de las Jornadas Sarteco), Malaga (Spain), September 2021