Journal Papers: Last 5 Years
Author: O. Plata

2023

Comparing Assembly Strategies for Third-Generation Sequencing Technologies Across Different Genomes [doi]
E. Espinosa, R. Bautista, I. Fernandez, R. Larrosa, E.L. Zapata, O. Plata
Genomics, August 2023

Time Series Analysis Acceleration with Advanced Vectorization Extensions [doi]
R. Quislant, I. Fernandez, E. Gutierrez, O. Plata
The Journal of Supercomputing, 79, February 2023, pp. 10178-10207

2022

TraTSA: A Transprecision Framework for Efficient Time Series Analysis [doi]
I. Fernandez, R. Quislant, S. Gonzalez-Navarro, E. Gutierrez, O. Plata
Journal of Computational Science, 63, September 2022, 101784

Speculative Barriers with Transactional Memory [doi]
M. Pedrero, R. Quislant, E. Gutierrez, E.L. Zapata, O. Plata
IEEE Transactions on Computers, 71 (1), January 2022, pp. 197-208

2021

Genome Sequence Alignment - Design Space Exploration for Optimal Performance and Energy Architectures [doi]
Y.M. Qureshi, J.M. Herruzo, M. Zapater, K. Olcoz, S. Gonzalez-Navarro, O. Plata, D. Atienza
IEEE Transactions on Computers, 70 (12), December 2021, pp. 2218-2233

An Abstract Machine Approach to Preserving Digital Information [doi]
I. Rummelhoff, E. Gutierrez, T. Kristoffersen, O. Liabo, B.M. Ostvold, O. Plata, S. Romero
IEEE Access, 9, November 2021, pp. 154914-154932

Enabling Fast and Energy-Efficient FM-index Exact Matching Using Processing-Near-Memory [doi]
J.M. Herruzo, I. Fernandez, S. Gonzalez-Navarro, O. Plata
The Journal of Supercomputing, 77, September 2021, pp. 10226-10251

2020

Accelerating Sequence Alignments Based on FM-Index Using the Intel KNL Processor [doi]
J.M. Herruzo, S. Gonzalez-Navarro, P. Ibañez, V. Viñals, J. Alastruey, O. Plata
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 17 (4), July-August 2020, pp. 1093-1104

2019

Accelerating Time Series Motif Discovery in the Intel Xeon Phi KNL Processor [doi]
I. Fernandez, A. Villegas, E. Gutierrez, O. Plata
The Journal of Supercomputing, 75, November 2019, pp. 7053-7075

Improving Hardware Transactional Memory Parallelization of Computational Geometry Algorithms Using Privatizing Transactions [doi]
R. Quislant, E. Gutierrez, E.L. Zapata, O. Plata
Journal of Parallel and Distributed Computing, 131, September 2019, pp. 103-119

Toward a Software Transactional Memory for Heterogeneous CPU-GPU Processors [doi]
A. Villegas, A. Navarro, R. Asenjo, O. Plata
The Journal of Supercomputing, 75, August 2019, pp. 4177-4192